Automated maps of seasonal flu and SARS-CoV-2 viruses show important evolutionary groups
20 Nov 2024 by John Huddleston
Openings for bioinformatics analyst and software engineer to contribute to Nextstrain platform
21 Jul 2023 by Trevor Bedford
Openings for bioinformatician and full-stack developer to contribute to Nextstrain platform
12 Jul 2021 by Trevor Bedford
Predicting seasonal influenza evolution
13 Oct 2020 by John Huddleston and Pierre Barrat-Charlaix
Cryptic transmission of novel coronavirus revealed by genomic epidemiology
2 Mar 2020 by Trevor Bedford
Early warnings of novel coronavirus from genomic epidemiology and the global open scientific response
31 Jan 2020 by Trevor Bedford
How can we improve support for open pathogen genomic analysis in public health settings?
13 Jan 2020 by Allison Black
Using Nextstrain narratives to explain WNV spread and evolution
31 Oct 2019 by James Hadfield
Forecasting influenza virus evolution to Sep 2020
26 Sep 2019 by Trevor Bedford
Quantifying within-host evolution of H5N1 influenza in humans and poultry in Cambodia
28 Jun 2019 by Louise Moncla
A concrete example of the value of data sharing
11 Dec 2018 by Allison Black
Full-stack developer and bioinformatician for an open-source genomic epidemiology research platform
14 Nov 2018 by Thomas Sibley
Genomic epidemiology supports multiple introductions and cryptic transmission of Zika virus in Colombia
29 Oct 2018 by Allison Black and Louise Moncla
Multiple introductions of mumps virus into Washington State
22 Oct 2018 by Louise Moncla and Allison Black
Dengue antigenic relationships predict evolutionary dynamics
2 Oct 2018 by Sidney Bell
Deep mutational scanning helps predict evolutionary fates of human H3N2 influenza variants
10 Apr 2018 by John Huddleston
Developer for real-time genomic epidemiology platform Nextstrain.org
2 Apr 2018 by Trevor Bedford
Characterization of 27 mumps virus genomes from the Washington state outbreak
29 Jan 2018 by Louise Moncla and Allison Black
Seasonal influenza circulation patterns and projections for Sep 2017 to Sep 2018
26 Sep 2017 by Trevor Bedford
MERS-CoV spillover at the camel-human interface
10 Aug 2017 by Gytis Dudas
Establishment and spread of Zika in the Americas
24 May 2017 by Trevor Bedford
Ebola spread through West Africa
12 Apr 2017 by Gytis Dudas
Preliminary analysis of the fifth epidemic of avian influenza A/H7N9
10 Mar 2017 by James Hadfield
Zika in the USVI genome announcement
6 Mar 2017 by Trevor Bedford
Seasonal influenza circulation patterns and projections for 2017-2018
2 Mar 2017 by Trevor Bedford
Open Science Prize and nextstrain.org relaunch
28 Feb 2017 by Trevor Bedford
Dynamics of cross-species transmission in SIV
23 Jan 2017 by Sidney Bell
The Bedford lab becomes a sequencing lab...
3 Jan 2017 by Allison Black
Evolutionary dynamics of infectious hematopoietic necrosis virus in Pacific salmon
30 Dec 2016 by Allison Black
The Open Science Prize and a shared scientific endeavor
15 Dec 2016 by Trevor Bedford
Postcard from Brazil
28 Sep 2016 by Allison Black
Seasonal influenza circulation patterns and projections for 2016-2017
21 Sep 2016 by Trevor Bedford
Summer 2016
22 Aug 2016 by Trevor Bedford
Zika sequencing in Brazil (or Trevor does fieldwork)
10 Jun 2016 by Trevor Bedford
Programmer for real-time phylodynamic analysis
4 Apr 2016 by Trevor Bedford
Seasonal influenza circulation patterns and future projections
15 Feb 2016 by Trevor Bedford
Strain-specific vaccine efficacy in the RTS,S malaria vaccine
26 Oct 2015 by Trevor Bedford
Analysis and visualization of influenza antigenic evolution
6 Oct 2015 by Trevor Bedford
Seasonal influenza circulation patterns and future projections
24 Sep 2015 by Trevor Bedford
Pathogen evolution, selection and immunity
20 Jul 2015 by Trevor Bedford
New recruits
30 Jun 2015 by Trevor Bedford
On scientific publishing practices in the face of public health crises
22 Jun 2015 by Trevor Bedford
Ebola transmission and evolution revealed through genomic analysis
18 Jun 2015 by Trevor Bedford
Tracking down the sneeze that started seasonal flu
8 Jun 2015 by Trevor Bedford
Global circulation patterns of seasonal influenza viruses
8 Jun 2015 by Trevor Bedford
Real-time analysis of Ebola evolution and geographic spread
5 Jun 2015 by Trevor Bedford
Postdoc in immune repertoire dynamics
14 May 2015 by Trevor Bedford
Observations of recent influenza evolution and predictions for the 2015-2016 flu season
5 Mar 2015 by Trevor Bedford
Real-time tracking of influenza virus evolution
24 Feb 2015 by Trevor Bedford
Seasonal migration of influenza lineages
30 Dec 2014 by Trevor Bedford
Is Ebola adapting?
11 Nov 2014 by Trevor Bedford
Bayesian estimation of phylogenetic signal
27 Oct 2014 by Trevor Bedford
Reassortment between influenza B lineages
16 Oct 2014 by Trevor Bedford
Uncovering the "hidden history" of HIV emergence and spread
2 Oct 2014 by Trevor Bedford
Challenges in phylodynamics
26 Sep 2014 by Trevor Bedford
Avian influenza diversity and persistence
15 Aug 2014 by Trevor Bedford
Assessing correlated trait evolution
25 Jun 2014 by Trevor Bedford
Molecular evolution of the human B cell repertoire
12 Mar 2014 by Trevor Bedford
Reassortment patterns between influenza B lineages
7 Mar 2014 by Trevor Bedford
Predicting flu migration patterns
20 Feb 2014 by Trevor Bedford
Publishing with eLife
4 Feb 2014 by Trevor Bedford
Postdoc in viral phylogenetics and evolution
3 Feb 2014 by Trevor Bedford
Identifying sites responsible for antigenic change in influenza
27 Dec 2013 by Trevor Bedford
Comparing amino acid distance to BLOSUM as a predictor of antigenic drift
20 Dec 2013 by Trevor Bedford
Phylowood phylogeographic visualization
7 Nov 2013 by Trevor Bedford
Version 2.0
1 Nov 2013 by Trevor Bedford
Newton Institute presentation
27 Aug 2013 by Trevor Bedford
Issue tracking reviewer criticisms
14 May 2013 by Trevor Bedford
Integrating influenza antigenic dynamics with molecular evolution
3 May 2013 by Trevor Bedford
Tutorial on inferring spatiotemporal dynamics from sequence data
8 Apr 2013 by Trevor Bedford
Wikipedia x PLoS topics page on viral phylodynamics
25 Mar 2013 by Trevor Bedford
Fixation of new alleles
1 Mar 2013 by Trevor Bedford
Influenza diversity across spatial scales
26 Feb 2013 by Trevor Bedford
Visualizing evolution as a network of shared mutations
18 Feb 2013 by Trevor Bedford
What limits the rate of virus adaptation?
7 Jan 2013 by Trevor Bedford
Plotting interpretable phylogenies
21 May 2012 by Trevor Bedford
Comparing performance of Processing.js and D3.js
7 May 2012 by Trevor Bedford
Simulating virus evolution and epidemiology
22 Mar 2012 by Trevor Bedford
Running the numbers for Contagion... they don't come out well
19 Mar 2012 by Trevor Bedford
Model comparison through path sampling and AICM
12 Mar 2012 by Trevor Bedford
Visualizing the global circulation of the human influenza virus
29 Feb 2012 by Trevor Bedford
Some thoughts on a GitHub of Science
20 Feb 2012 by Trevor Bedford
Estimating global flu diversity
29 Jan 2012 by Trevor Bedford
LaTeX manuscript template with web display
16 Jan 2012 by Trevor Bedford
Interactive visualization of the Serengeti food web
3 Jan 2012 by Trevor Bedford
Spatial guilds in the Serengeti food web revealed by a Bayesian group model
2 Jan 2012 by Trevor Bedford
Reproducible peer review
13 Dec 2011 by Trevor Bedford
Canalization of the evolutionary trajectory of the human influenza virus
23 Nov 2011 by Trevor Bedford
Visualizing mortality data
31 Oct 2011 by Trevor Bedford
Estimating the effective population size of swine flu
25 Oct 2011 by Trevor Bedford
Illustrating Darwin's Principle of Divergence
10 Oct 2011 by Trevor Bedford
Wright-Fisher population genetic simulation
23 Aug 2011 by Trevor Bedford
Strength and tempo of selection revealed in viral gene genealogies
25 Jul 2011 by Trevor Bedford
Matching R0 to cumulative prevalence in the H1N1 influenza pandemic
14 Jun 2011 by Trevor Bedford
Counting parameters in a phylogeny
4 Apr 2011 by Trevor Bedford
Multi-strain multi-deme model with SIRS dynamics
8 Mar 2011 by Trevor Bedford
Updating coaltrace to use Javascript
2 Sep 2010 by Trevor Bedford
Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster
10 Jun 2010 by Trevor Bedford
Reuters: "Who to blame for flu? Maybe the US, study finds"
28 May 2010 by Trevor Bedford
Global migration dynamics underlie evolution and persistence of human influenza A (H3N2)
27 May 2010 by Trevor Bedford
Presentation on phyloseminar.org
1 May 2010 by Trevor Bedford
Population genetic simulation on a mutational landscape
11 Mar 2010 by Trevor Bedford
Compilation of most interesting Wikipedia articles
13 Jan 2010 by Trevor Bedford
PACT: Posterior Analysis of Coalescent Trees
12 Oct 2009 by Trevor Bedford
Basic coalescent simulation with physics-based layout
23 Sep 2009 by Trevor Bedford
Welcome
17 Sep 2009 by Trevor Bedford