Lecture on viral phylodynamics

Viral phylodynamics


  • Introduction: These slides give an introduction to what is meant by phylodynamics.
  • Influenza: These slides describe influenza dynamics and antigenic evolution.
  • The Coalescent: These slides introduce the coalescent, demographic inference and selection.
  • Phylogenetics: These slides introduce phylogenetic inference via parsimony, maximum likelihood and Bayesian approaches.
  • Phylogenetics and virus evolution: These slides discuss phylogenetics as applied to virus evolution.
  • Genomic epidemiology of SARS-CoV-2: These slides discuss insights provided by genomic epidemiology into the SARS-CoV-2 pandemic.