Pathogen evolution, selection and immunity

Source code

github.com/trvrb/sismid

Contributors

Latest commits

04 Mar 2024 - Replace with relative links

04 Mar 2024 - Replace eq tags with $$

04 Mar 2024 - Replace eqinline with $$

04 Mar 2024 - Include Jekyll plugins

04 Mar 2024 - Update Jekyll config

Pages

/ sequences / practical / beast

/ sequences / practical / beauti

/ sequences / practical / data

/ sequences / practical / figtree

/ lineup / pneumo /

/ lineup / norovirus /

/ lineup / swine-flu /

/ lineup / seasonal-flu /

/ lineup / measles /

/ lineup / malaria /

/ lineup / dengue /

/ lineup / hiv /

/ lineup / pertussis /

/ lineup / sars-cov-2 /

/ lineup /

/ pathogens /

/ models / exercise /

/ models /

/ sequences / practical /

/ sequences /

/ serology /

/ selection /

/ forecasting /

/

/ immunity /

/ bcells /

/ timeseries / exercise /

/ timeseries /

/ selection / mutation-drift-exercise

/ selection / mutation-drift-selection-exercise

/ selection / mutation-drift-selection-statistics

/ selection / mutation-drift-statistics

/ python

/ sequences / practical / tracer

/ sequences / practical / vaccines

Measles

Introduction

Serology

Genetics

Fig 1 in Bedford et al. 2011.