Experimental protocols and bioinformatic pipelines for mumps genome sequencing

Louise Moncla¹, Allison Black^1,2, Trevor Bedford¹

¹Department of Epidemiology, University of Washington, Seattle, WA, USA, ²Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

Protocols for Illumina sequencing full genomes from buccal swabs
Bioinformatic pipeline for generating consensus genome sequences from raw Illumina fastq files
Data

Citation

Moncla et al. 2021. Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State. eLife 10: e66448.

Experimental protocols and bioinformatic pipelines for mumps genome sequencing

Louise Moncla1, Allison Black1,2, Trevor Bedford1

Citation

Louise Moncla¹, Allison Black^1,2, Trevor Bedford¹