Run the phylogeographic analysis
Open BEAST and select the file
This analysis (because of the function to infer ancestral states) requires that BEAGLE be loaded.
Select ‘Use BEAGLE library if available’.
Generally, I turn on SSE as this should give a decent speed increase and set the ‘Rescaling scheme’ to ‘Dynamic’.
Click on ‘Run’.
This will produce the output files
This analysis took ~24 hours to complete on a single cluster node.
I’ve included these files with the practical in the