Sequence analysis
Introduction to Kingman’s coalescent
Introduction to phylogenetic inference
BEAST Practical
- Practical: To be completed outside of class as desired.
Additional resources
- Felsenstein. 2003. Inferring Phylogenies. Sinauer Associates.
- Yang. 2006. Computational Molecular Evolution. Oxford University Press.
- Nordborg. 2000. Coalescent theory. Handbook of Statistical Genetics.
- Pybus and Rambaut. 2009. Evolutionary analysis of the dynamics of viral infectious disease. Nature Reviews Genetics.
- Black and Dudas. 2023. An applied genomic epidemiological handbook.