Trevor Bedford (@trvrb)
11 Dec 2020
HB Friday Faculty Talk
Fred Hutch
Slides at: bedford.io/talks
with John Huddleston, Richard Neher, Dave Wentworth, Becky Kondor, John McCauley, Hideki Hasegawa, Kanta Subbarao and others
Future frequency xi(t+Δt) of strain i derives from strain fitness fi and present day frequency xi(t), such that
ˆxi(t+Δt)=xi(t)exp(fiΔt)
Total strain frequencies at each timepoint are normalized. This captures clonal interference between competing lineages.
with Katie Kistler
Seasonal flu: WHO Global Influenza Surveillance Network, GISAID, John Huddleston, Richard Neher, Jover Lee, Dave Wentworth, Becky Kondor
Seasonal CoVs: Katie Kistler
SARS-CoV-2 genomic epi: Data producers from all over the world, GISAID and the Nextstrain team
Bedford Lab: Alli Black, John Huddleston, James Hadfield, Katie Kistler, Louise Moncla, Maya Lewinsohn, Thomas Sibley, Jover Lee, Kairsten Fay, Misja Ilcisin, Cassia Wagner, Miguel Paredes, Nicola Müller, Marlin Figgins, Eli Harkins