Data and code for unsampled analysis
Install
Install Python dependencies with pip install -r requirements.txt.
Outline
- Core methods code in
unsampled.py - Example calculations and toy data sets in
Coalescent_Model_Examples.ipynb - Detailed analysis of example coalescent tree in
Tree_1.ipynb - Validation of example coalescent trees in
Model_Performance_5_Trees.ipynb - Analysis of empirical Ebola tree in
Full_Ebola.ipynb