Possible Database schemes
Modification of current fauna
User databases:
Cleaning scripts for real-time pathogen analysis
Source code
Contributors
Latest commits
- 11 Jun 2018 - Merge pull request #20 from nextstrain/misc-tweaks Misc tweaks
- 07 Jun 2018 - Declare dependencies with version ranges rather than single versions …and lock exact versions in a simple, hopefully obvious requirements-locked.txt file. Notably, the exact versions are locked with `pip freeze` so that transitive deps are included as well. This matches changes in augur, where using `pip freeze` is much more useful with a larger and more varied set of deps. I generated the requirements-locked.txt using `pip freeze --local` in a clean virtualenv after installing requirements.txt.
- 07 Jun 2018 - Remove old-src/ No longer necessary and always available in git history if needed. This declutters the repo and git grep output.
- 07 Jun 2018 - camelcase_to_snakecase: Replace spaces with underscores …instead of stripping them. All of the lookup tables in source-data/, seem to expect underscores instead of spaces. For my particular case, the region "french polynesia" isn't in source-data/geo_regions.tsv but "french_polynesia" is. Warnings about this case and other country/region cases disappeared after this change.
- 07 Jun 2018 - Make src/run.py directly executable Avoiding the ubiquitous but unnecessary leading python invocation. This is solely for convenience.
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