Website for visualizing and interacting with phylogenies produced augur pipeline. Interactive visualization is done with d3.js.
Install all dependencies by running:
sudo gem install bundler bundle install
NOTE: This will probably fail with error messages. There are often problems with installations of
therubyracer. Run the following after the error messages:
sudo gem uninstall libv8 sudo gem install therubyracer -v '0.12.2' sudo gem install libv8 -v '184.108.40.206' -- --with-system-v8 bundle install
Build and compile
- Build JSONs via augur. These will be exported to
augur/flu/auspice/. Move JSON files to
- Create index files by running
- Compile site with Jekyll by running
jekyll buildfrom within the
auspice/directory. This creates a
_site/directory containing compiled resources.
netlify deploy --build --prod
NOTE: Be sure to include the
--build option as this runs the build command within
netlify.toml to replace the placeholder username and passwords with the environment variables set in Netlify.
Develop locally by running
jekyll serve and then going to
http://localhost:4000/ in the browser. Jekyll will recompile as local files are modified.