Website for visualizing and interacting with phylogenies produced augur pipeline. Interactive visualization is done with d3.js.
Build and compile
- Build JSONs via augur. These will be exported to
augur/flu/auspice/. Move JSON files to
- Create index files by running
- Compile site with Jekyll by running
jekyll buildfrom within the
auspice/directory. This creates a
_site/directory containing compiled resources.
Website is hosted on Amazon S3. Deploy with
s3_website push from within the
auspice/ directory. This pushes the
_site/ directory to the specified S3 bucket. S3 credentials are stored in ENV as
S3_SECRET. Environment variables can be updated locally without fear of committing private information.
Develop locally by running
jekyll serve and then going to
http://localhost:4000/ in the browser. Jekyll will recompile as local files are modified.