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id3c
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design-2019-summer
01-overview
Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.
Source code
github.com/seattleflu/
id3c
Contributors
tsibley
joverlee521
kairstenfay
davereinhart
bencap
kschwabefry
seidelma
truong97
cooperqmarshall
trvrb
Latest commits
16 Jun 2022 -
Merge pull request #305 from seattleflu/rework-upsert-presence-absence Rework upsert presence_absence function
25 May 2022 -
Log warnings for unexpected data changes on presence_absence records Added logging to have visibility when `presence_absence` records are being updated in an unexpected way, either with a different test result (`present`), `sample_id`, or `target_id` value. Changes to those values should not occur in normal circumstances, and should be investigated when they do happen.
24 May 2022 -
Rework upsert presence_absence function The `upsert_presence_absence` function is being updated in line with the other upsert functions, to prevent gaps in the sequence used for `presence_absence_id` and avoid unneccessary updates when data has not changed.
31 May 2022 -
Merge pull request #308 from seattleflu/presence-absence-etl-parse-datetime Handle nanoseconds in timestamp values
31 May 2022 -
Include types-python-dateutil package
Pages
/ dev / doc / 01-barcode-slices
/ dev / doc / design-2019-summer / 01-overview
/ dev / doc / design-2019-summer / 02-organisms
/ dev / doc / design-2019-summer / 03-places
/ dev / doc / design-2019-summer / 04-fhir
/ dev / doc / design-2019-summer / 05-rdml
/ dev / doc / design-2019-summer / 06-redcap
/ dev / doc / design-2019-summer / 07-genomics
/ dev / doc / design-2019-summer / 08a-vaccination
/ dev / doc / design-2019-summer / 08b-race-ethnicity
/ dev / doc / design-2019-summer / 08c-symptoms
/ dev / doc / design-2019-summer / 09-modularization
/ dev / doc / design-2019-summer / 10-infrastructure
/ DEVELOPMENT
/
Design notes for summer 2019
Topics
Overview
Organisms
Places
FHIR
RDML
REDCap
Genomics
Vaccination
,
Race and Ethnicity
, &
Symptoms
Modularization
Infrastructure