Design notes for summer 2019
Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.
Source code
Contributors
Latest commits
- 16 Jun 2022 - Merge pull request #305 from seattleflu/rework-upsert-presence-absence Rework upsert presence_absence function
- 25 May 2022 - Log warnings for unexpected data changes on presence_absence records Added logging to have visibility when `presence_absence` records are being updated in an unexpected way, either with a different test result (`present`), `sample_id`, or `target_id` value. Changes to those values should not occur in normal circumstances, and should be investigated when they do happen.
- 24 May 2022 - Rework upsert presence_absence function The `upsert_presence_absence` function is being updated in line with the other upsert functions, to prevent gaps in the sequence used for `presence_absence_id` and avoid unneccessary updates when data has not changed.
- 31 May 2022 - Merge pull request #308 from seattleflu/presence-absence-etl-parse-datetime Handle nanoseconds in timestamp values
- 31 May 2022 - Include types-python-dateutil package
Pages
- / dev / doc / 01-barcode-slices
- / dev / doc / design-2019-summer / 01-overview
- / dev / doc / design-2019-summer / 02-organisms
- / dev / doc / design-2019-summer / 03-places
- / dev / doc / design-2019-summer / 04-fhir
- / dev / doc / design-2019-summer / 05-rdml
- / dev / doc / design-2019-summer / 06-redcap
- / dev / doc / design-2019-summer / 07-genomics
- / dev / doc / design-2019-summer / 08a-vaccination
- / dev / doc / design-2019-summer / 08b-race-ethnicity
- / dev / doc / design-2019-summer / 08c-symptoms
- / dev / doc / design-2019-summer / 09-modularization
- / dev / doc / design-2019-summer / 10-infrastructure
- / DEVELOPMENT
- /