ID3C customizations for the Seattle Flu Study
This repository contains:
a Sqitch project for managing Seattle Flu-specific static data in the ID3C database, such as organism assignments for targets, extra site details, and bespoke views.
an ID3C extension which provides additional
id3cCLI subcommands and ETL routines.
additional support data and code
Changes in this Sqitch project can rely on changes in the ID3C Sqitch project
by prefixing them with the project name (
seattleflu/schema currently, but
subject to change after reorganization).
Run all tests with:
pipenv run pytest -v
or name an individual test file, for example:
pipenv run pytest tests/docstrings.py