Extensions of ID3C for the Seattle Flu Study

Source code

github.com/seattleflu/id3c-customizations

Contributors

Latest commits

12 Aug 2020 - Merge pull request #127 from seattleflu/formative-location-names shipping.scan_enrollments_v1: add `geo_location_name` to match GeoJSON

12 Aug 2020 - Merge pull request #128 from seattleflu/neighborhood-district-names Neighborhood district names

12 Aug 2020 - locations: Preserve human-friendly neighborhood district name in details We can then pull this back out in our queries for maps. The "Seattle--" prefix is both clarifying and parallels the name structure of PUMAs, which is nice since we often use Seattle neighborhoods + WA PUMAs.

12 Aug 2020 - locations: Move spatial SQL into a parameter for easier reading

11 Aug 2020 - Tag schema

Pages

/

/ clinical / uw /

/ locations /

ID3C customizations for the Seattle Flu Study

This repository contains:

a Sqitch project for managing Seattle Flu-specific static data in the ID3C database, such as organism assignments for targets, extra site details, and bespoke views.
an ID3C extension which provides additional id3c CLI subcommands and ETL routines.
additional support data and code

Sqitch

Changes in this Sqitch project can rely on changes in the ID3C Sqitch project by prefixing them with the project name (seattleflu/schema currently, but subject to change after reorganization).

Tests

Run all tests with:

pipenv run pytest -v

or name an individual test file, for example:

pipenv run pytest tests/docstrings.py