Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

Source code

github.com/blab/flu-forecasting

Contributors

Latest commits

15 Oct 2020 - Merge pull request #2 from blab/blog-post Add blog post content

15 Oct 2020 - Update blog post html

07 Oct 2020 - Finished table with classes to highlight status

07 Oct 2020 - Clean up references in blog post Use the "et al." abbreviation when there are more than two authors (note custom CSL for pandoc-citeproc and updated pandoc command in the README), added citations for simulation software, and added URLs to all references.

06 Oct 2020 - Finished complete draft of blog post Adds section comparing our two studies and refines the conclusion section.

Pages

/

/ data / simulations /

/ analyses / projected-frequencies /

/ analyses / identify-optimal-lbi-parameters /

/ manuscript / blog-post /

README

Install pandoc and pandoc-crossref. Compile the blog post to HTML with pandoc.

pandoc \
    --filter pandoc-crossref \
    --filter pandoc-citeproc \
    --bibliography=references.bib \
    --csl chicago-author-date.csl \
    --template template.html \
    -s predicting-seasonal-influenza-evolution.md \
    -o predicting-seasonal-influenza-evolution.html