Identifying optimal LBI parameters for the fitness model
Run snakemake --use-conda to run analysis and compile report with figures.
The final report will be in results.pdf.
Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution
Source code
Contributors
Latest commits
- 11 Dec 2020 - Test out alternate titer models Adds ability to select strains by different titer assay types (e.g., HI or FRA), adds a config for a dataset and build to test out this concept, and adds results for titer substitution model cross-immunity and other composite distance-from-consensus metric models.
- 10 Dec 2020 - Update profile to run jobs on SLURM cluster
- 30 Nov 2020 - Add notebook to produce data for EMD example
- 10 Dec 2020 - Merge pull request #3 from blab/consensus-metric Consensus metric
- 09 Dec 2020 - Add forecast table for delta frequency
Pages