RethinkDB database to support real-time virus analysis
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- 23 Nov 2020 - Update flu strain name fix for NIID virus strain name
- 23 Nov 2020 - tdb/niid_upload: add 'hck' and 'nib121' to parse serum strain Also updated `vdb/flu_upload` to parse 'HCK' to get the correct "cell" passage type for NIID titers.
- 19 Nov 2020 - Merge pull request #103 from nextstrain/vidrl-flat-file VIDRL flat file
- 18 Nov 2020 - Ingest VIDRL flat CSV files When using the `tdb/vidrl_upload.py` script, provide the `--ftype flat` option to ingest the flat CSV file. The CSV is converted to the expected TSV format for the `tdb/elife_upload.py` script. Uses the new `source-data/vidrl_flat_file_column_map.tsv` to standardize the column names.
- 18 Nov 2020 - tdb/vidrl_upload: refactor in preparation for flat file ingest 1. Pull out hard-coded elife columns as a global variable. 2. Generalize `parse_sera_mapping_to_dict` to use `tsv_file` parameter and rename to `parse_tsv_mapping_to_dict`.
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