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The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
Source code
Contributors
Latest commits
- 20 Dec 2022 - Merge branch 'trs/standalone/older-glibc'
- 20 Dec 2022 - CHANGES: Describe improved support for older Linux distros
- 19 Dec 2022 - Support even older glibc (and thus Linux distro) versions for our standalone binary Arranges for `pyoxidizer build` to run inside of a manylinux2014 container instead of on the ambient host, which yields the following glibc minimum version improvements compared to our existing binaries produced in CI (as reported by `pyoxidizer analyze`): Minimum Version: 2.27 → 2.17 Minimum Distro Versions: Debian 10 → 8 Fedora 28 → 19 OpenSUSE 15.3 → 12.3 RHEL 8 → 7 Ubuntu 18.04 → 14.04 The manylinux containers are readily available, well-maintained, and designed exactly for this purpose. The standalone Python distributions used by PyOxidizer are themselves limited to glibc ≥2.16, so we're now basically at that limit! manylinux2010 versions are too old. Related-to: https://github.com/nextstrain/cli/issues/234
- 19 Dec 2022 - dev: Add devel/pyoxidizer to auto-install and invoke a correct PyOxidizer binary This simplifies local development a little bit, but primarily will make it easier to move our Linux build into a build container with older glibc versions in order to support older Linux distros like CentOS 7.
- 15 Dec 2022 - Merge branch 'trs/standalone-installers/exec-check'
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