Web app for visualizing pathogen evolution
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Auspice ‘Read The Docs’ Documentation.

Building the docs

Build dependencies are managed with Conda. Install them into an isolated environment named auspice-docs with:

conda env create

Enter the environment with:

conda activate auspice-docs

You can now build the documentation with:

make html

which invokes Sphinx to build static HTML pages in build/html/. You can view them by running:

open _build/html/index.html

You can clean the build directory for a fresh start with:

make clean

Leave the environment with:

conda deactivate