Web app for visualizing pathogen evolution

Auspice Documentation

This folder contains the static site generator and the markdown files which form the auspice documentation website, served via GitHub pages at nextstrain.github.io/auspice. We are using Docusaurus to generate the static site.

Note that the code & content in this folder is used to generate the files in the auspice/docs directory, which are served by github pages. Those files should not be modified, rather edit the contents of this directory & regenerate the documentation.

Folder structure of auspice/docs-src/

  • README.md this file
  • ./docs/ contains the raw markdown files. The filenames (and directory names) will be used as URLs. New pages here should also be added to sidebars.json.
  • ./website/ the Docusaurus files needed to build the website.
    • ./sidebars.json define the links in the sidebar
    • ./pages/index.js the splash page
    • ./siteConfig.js docusarus configuration - see docs here

How to run

All commands run from this directory (docs-src).

Installing dependencies

npm install
# you must also have installed the dependencies from the parent directory (`auspice`)

Developing (live reloading etc):

npm run develop

(re-)build the static site

npm run build

This command will modify the files in ../docs/ which is where the GitHub pages site is served from.


Once changes are merged into the master branch and pushed to GitHub the changes will be live.