Augur manuscript
Setup
conda create -n augur-manuscript graphviz pandoc
conda activate augur-manuscript
Compile manuscript
Use pandoc to compile the paper.
make
Alternately, use JOSS’s Docker image to compile the paper from this paper directory.
docker run --rm \
--volume $PWD:/data \
--user $(id -u):$(id -g) \
--env JOURNAL=joss \
openjournals/paperdraft