Compatibility between Augur & Auspice versions
From mid-2019, we're changing the format of the output file produced by
augur export to allow more flexibility going forward.
This lines up with the version 2 release of
auspice (release notes), which opens up exciting new possibilities.
We also recognise that we may need to adjust things again in the future. By setting up versions now, we'll be able to continue to expand
auspice while minimizing disruption to users.
You can get more information on how to move to using
export v2 in
augur v6.0 in our handy guide.
Why does compatibility matter?
To get great visualisations, the final step of the
augur export produces output as one or more JSON files*.
The JSON(s) are then read by
auspice to produce trees, graphs, and maps.
*This compatibility only refers to the JSON file(s) produced by
augur export, not those produced by other
augur versions will produce different JSON output formats, which in turn will work with different
We aim to support backwards compatibility as much as possible, and of course, if you're you're using the latest
augur, JSON, and
auspice versions, everything will work smoothly!
Whenever possible, we recommend updating your run to work with the latest
augur and outputing the most recent JSON format to view with the latest
auspice - it future-proofs your work and ensures you'll benefit from all the latest features and improvements.
But, we know that for a variety of reasons, you can't always do this straight away. To help keep your research flowing, here are some tables of how different versions of
augur, export JSONs, and
auspice are compatible.
|Augur Version||Produces JSON||Works with Auspice|
||v1 & v2|
|v1 & v2|
|JSON Version||Produced by Augur Version||Works with Auspice|
|v1 (meta + tree)||v5 (via
|v1 & v2|
|Auspice Version||Takes JSON|
|v2||v1 or v2|