Pipelines to do MinION sequencing of Zika virus

Pipelines for Zika sequencing

Trevor Bedford1

1Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

We have sequenced Zika genomes with both the Oxford Nanopore MinION and the on the Illumina MiSeq. The data analysis pipelines are specific to the platform, so we're sharing both pipelines.