Evolutionary and epidemiological analysis of Roka HIV outbreak

Temporally-resolved phylogenies for HIV-Env

This directory contains files for inferring temporally-resolved phylogenetic trees HIV-Env. PDF versions of the figures shown below are also saved here.

  • The .trees file contains 2000 trees representing independent draws for the posterior distribution of trees.
  • The .mcc file is the maximum clade credibility tree constructed from the 1800 posterior trees (200 trees burned-in)

Time-tree for HIV-Env