Maximum likelihood phylogenies for HCV
This directory contains files for inferring maximum likelihood phylogenies for HCV1b and HCV6e. Files with
bootstrap are the highest likelihood trees from raxml with bootstrap support values for all nodes in the tree. Files with
figtree_reroot are the same files but have been re-rooted with the best fitting root (as determined in path-o-gen). These are the input files used for the figure creation.