Website for visualizing and interacting with phylogenies produced by the nextstrain/augur pipeline. Interactive visualization is done with d3.js. This is v1 of auspice and is in maintenance mode. Active development is continuing on v2 of auspice at nextstrain/auspice.
Build and compile
Build JSONs via augur. These will be exported to
augur/flu/auspice/. Move JSON files to
auspice/data/. Compile site with Jekyll by running
jekyll build from within the
auspice/ directory. This creates a
_site/ directory containing compiled resources.
Website is hosted on Amazon S3. Deploy with
s3_website push from within the
auspice/ directory. This pushes the
_site/ directory to the specified S3 bucket. S3 credentials are stored in ENV as
S3_SECRET. Environment variables can be updated locally without fear of committing private information.
Develop locally by running
jekyll serve and then going to
http://localhost:4000/ in the browser. Jekyll will recompile as local files are modified.